Workflow Constructed From History 'imported: testpourGCC' 4.0
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Run on GalaxyMass spectrometry: LC-MS analysis
Associated Tutorial
This workflows is part of the tutorial Mass spectrometry: LC-MS analysis, available in the GTN
Thanks to...
Tutorial Author(s): Mélanie Petera, Gildas Le Corguillé, Jean-François Martin, Yann Guitton, Workflow4Metabolomics core team
Tutorial Contributor(s): Helena Rasche, Saskia Hiltemann, Gildas Le Corguillé, Björn Grüning
Funder(s): ELIXIR Europe
Steps
| ID | Name | Description |
|---|---|---|
| 10 | xcms fillChromPeaks (fillPeaks) | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.4.4.0 |
| 11 | CAMERA.annotate | toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.4 |
| 12 | Batch_correction | toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/2.1.2 |
| 13 | Quality Metrics | toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8 |
| 14 | Quality Metrics | toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8 |
| 15 | Generic_Filter | toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2017.04 |
| 16 | Univariate | toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4 |
| 17 | Generic_Filter | toolshed.g2.bx.psu.edu/repos/melpetera/generic_filter/generic_filter/2017.04 |
| 18 | HMDB MS search | toolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/wsdl_hmdb/2018-10-01 |
| 2 | MSnbase readMSData | toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.8.2.1 |
| 3 | xcms findChromPeaks (xcmsSet) | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_xcmsset/abims_xcms_xcmsSet/3.4.4.1 |
| 4 | xcms plot chromatogram | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 |
| 5 | xcms findChromPeaks Merger | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.4.4.0 |
| 6 | xcms groupChromPeaks (group) | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0 |
| 7 | xcms adjustRtime (retcor) | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.4.4.1 |
| 8 | xcms plot chromatogram | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 |
| 9 | xcms groupChromPeaks (group) | toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0 |
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Created: 2nd Jun 2025 at 10:59
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