openms-metaprosip/main
v0.1 (earliest)

v0.2 (latest)

v0.1 (earliest)

Workflow Type: Galaxy

Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

SEEK ID: https://workflowhub.eu/workflows/613?version=1

Inputs

ID	Name	Description	Type
Centroided LC-MS datasets	Centroided LC-MS datasets	mgf, ms2, mzml or mzxml datasets	File[]
Fasta Database	Fasta Database	A protein sequence database in FASTA format	File
Fixed modifications	Fixed modifications	used for the MSGF+ search	string
Labeled element	Labeled element	Used for MetaProSIP (single letter code)	string
Precursor monoisotopic mass tolerance (ppm)	Precursor monoisotopic mass tolerance (ppm)	passed to - MSGF+ -precursor_mass_tolerance - MetaProSIP -mz_tolerance_ppm	float
Variable modifications	Variable modifications	used for the MSGF+ search	string

ID	Name	Description
6	Sort collection	__SORTLIST__
7	DecoyDatabase	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.8+galaxy0
8	FeatureFinderMultiplex	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.8+galaxy0
9	MSGFPlusAdapter	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.8+galaxy0
10	PeptideIndexer	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.8+galaxy0
11	FalseDiscoveryRate	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.8+galaxy0
12	IDMapper	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.8+galaxy0
13	MetaProSIP	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_metaprosip/MetaProSIP/2.8+galaxy0

ID	Name	Description	Type
Feature fitting result	Feature fitting result	n/a	File
Peptide centric result	Peptide centric result	n/a	File

Updated to v0.2

Frozen v0.2 b4e7999

Updated to v0.1

Frozen v0.1 798090c

Creators and Submitter

License

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Created: 20th Oct 2023 at 03:01