Workflow Type: Galaxy
Frozen
Frozen
Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.
Inputs
ID | Name | Description | Type |
---|---|---|---|
K-mer length | #main/K-mer length | n/a |
|
Maternal reads | #main/Maternal reads | Collection of Illumina reads for the mother of the Individual sequenced with Pacbio Hifi. |
|
Pacbio Hifi reads | #main/Pacbio Hifi reads | n/a |
|
Paternal reads | #main/Paternal reads | Collection of Illumina reads for the father of the Individual sequenced with Pacbio Hifi. |
|
Ploidy | #main/Ploidy | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
6 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
7 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
8 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
9 | GenomeScope | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0.1+galaxy0 |
10 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
11 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
12 | Meryl | toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 |
13 | Genomescope on paternal haplotype | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0.1+galaxy0 |
14 | Genomescope on maternal haplotype | toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0.1+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
GenomeScope Model Parameters (child) | #main/GenomeScope Model Parameters (child) | n/a |
|
GenomeScope linear plot (child) | #main/GenomeScope linear plot (child) | n/a |
|
GenomeScope linear plot (maternal) | #main/GenomeScope linear plot (maternal) | n/a |
|
GenomeScope linear plot (paternal) | #main/GenomeScope linear plot (paternal) | n/a |
|
GenomeScope log plot (child) | #main/GenomeScope log plot (child) | n/a |
|
GenomeScope log plot (maternal) | #main/GenomeScope log plot (maternal) | n/a |
|
GenomeScope log plot (paternal) | #main/GenomeScope log plot (paternal) | n/a |
|
GenomeScope summary (child) | #main/GenomeScope summary (child) | n/a |
|
GenomeScope transformed linear plot (child) | #main/GenomeScope transformed linear plot (child) | n/a |
|
GenomeScope transformed linear plot (maternal) | #main/GenomeScope transformed linear plot (maternal) | n/a |
|
GenomeScope transformed linear plot (paternal) | #main/GenomeScope transformed linear plot (paternal) | n/a |
|
GenomeScope transformed log plot (child) | #main/GenomeScope transformed log plot (child) | n/a |
|
GenomeScope transformed log plot (maternal) | #main/GenomeScope transformed log plot (maternal) | n/a |
|
GenomeScope transformed log plot (paternal) | #main/GenomeScope transformed log plot (paternal) | n/a |
|
Meryl database : Child | #main/Meryl database : Child | n/a |
|
Meryl database : maternal | #main/Meryl database : maternal | n/a |
|
Meryl database : paternal | #main/Meryl database : paternal | n/a |
|
Version History
v0.1.4 (latest) Created 7th Oct 2024 at 16:34 by WorkflowHub Bot
Updated to v0.1.4
Frozen
v0.1.4
0d60097
v0.1.1 (earliest) Created 31st Oct 2023 at 03:01 by WorkflowHub Bot
Updated to v0.1.1
Frozen
v0.1.1
e6b9882
Creators and Submitter
Creators
Not specifiedAdditional credit
VGP, Galaxy
Submitter
Tool
Activity
Views: 3702 Downloads: 545 Runs: 0
Created: 31st Oct 2023 at 03:01
Last updated: 8th Aug 2024 at 03:02
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Attributions
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