assembly-with-flye/main
v0.3 (latest)

v0.3 (latest)

v0.2

v0.1 (earliest)

Workflow Type: Galaxy

Assemble long reads with Flye, then view assembly statistics and assembly graph

SEEK ID: https://workflowhub.eu/workflows/750?version=3

Inputs

ID	Name	Description	Type
Input sequence reads	Input sequence reads	Sequence reads e.g. nanopore	File

ID	Name	Description
1	Flye: assembly	toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.1+galaxy0
2	Quast genome report	toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
3	Fasta statistics	toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
4	Bandage image: Flye assembly	toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4

ID	Name	Description	Type
Flye assembly (consensus)	Flye assembly (consensus)	n/a	File
Flye assembly (assembly_graph)	Flye assembly (assembly_graph)	n/a	File
Flye assembly (Graphical Fragment Assembly)	Flye assembly (Graphical Fragment Assembly)	n/a	File
Flye assembly (assembly_info)	Flye assembly (assembly_info)	n/a	File
Quast: HTML report	Quast: HTML report	n/a	File
Flye assembly statistics	Flye assembly statistics	n/a	File
Bandage Image: Assembly Graph Image	Bandage Image: Assembly Graph Image	n/a	File

Updated to v0.3

Frozen v0.3 46baceb

Updated to v0.2

Frozen v0.2 79b11e9

Updated to v0.1

Frozen v0.1 5a01eff

Creators and Submitter

License

Activity

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Created: 15th Feb 2024 at 03:01