assembly-with-flye/main

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Workflow Type: Galaxy

Assemble long reads with Flye, then view assembly statistics and assembly graph

SEEK ID: https://workflowhub.eu/workflows/750?version=1

Inputs

ID Name Description Type
Input sequence reads Input sequence reads Sequence reads e.g. nanopore
  • File

Steps

ID Name Description
1 Flye: assembly toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.1+galaxy0
2 Quast genome report toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
3 Fasta statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
4 Bandage image: Flye assembly toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4

Outputs

ID Name Description Type
Flye assembly (consensus) Flye assembly (consensus) n/a
  • File
Flye assembly (assembly_graph) Flye assembly (assembly_graph) n/a
  • File
Flye assembly (Graphical Fragment Assembly) Flye assembly (Graphical Fragment Assembly) n/a
  • File
Flye assembly (assembly_info) Flye assembly (assembly_info) n/a
  • File
Quast: HTML report Quast: HTML report n/a
  • File
Flye assembly statistics Flye assembly statistics n/a
  • File
Bandage Image: Assembly Graph Image Bandage Image: Assembly Graph Image n/a
  • File

Version History

v0.2 (latest) Created 27th Mar 2024 at 03:01 by WorkflowHub Bot

Updated to v0.2


Frozen v0.2 79b11e9

v0.1 (earliest) Created 15th Feb 2024 at 03:01 by WorkflowHub Bot

Updated to v0.1


Frozen v0.1 5a01eff
help Creators and Submitter
Creator
  • Anna Syme
Submitter
License
MIT License
Activity

Views: 2058   Downloads: 291   Runs: 0

Created: 15th Feb 2024 at 03:01

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