Workflows

What is a Workflow?
1299 Workflows visible to you, out of a total of 1382

Type: Galaxy

Creators: Yi Sun, Arif Khan, nfdi4bioimage

Submitter: Yi Sun

DUNE: Deep feature extraction by UNet-based Neuroimaging-oriented autoEncoder

A versatile neuroimaging encoder that captures brain complexity across multiple diseases: cancer, dementia and schizophrenia.

Overview

DUNE (Deep feature extraction by UNet-based Neuroimaging-oriented autoEncoder) is a neuroimaging-oriented deep learning model designed to extract deep features from multisequence brain MRIs, enabling their processing by basic machine learning algorithms. This project provides an ...

Type: Python

Creator: Thomas Barba

Submitter: Thomas Barba

DOI: 10.48546/workflowhub.workflow.1809.1

Stable

Description

The Settlement Delineation and Analysis (SDA) workflows generates a settlement network from geospatial settlement data. It can process geotiff and shapefile inputs and was originally designed to operate on the World Settlement Footprint dataset. Through multiple workflow stages, a settlement network is constructed, contracted (i.e. clustered) and ultimately analysed with centrality measures. The output shapefile stores the ...

Type: Docker

Creator: Lorenz Gruber

Submitter: Lorenz Gruber

DOI: 10.48546/workflowhub.workflow.1308.2

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Work-in-progress

DT-GEO DTC61 WF6101

This repository contains a Common Workflow Language (CWL) and Ro-Crate metadata definition for DTC-T1 workflow 6101, which is designed for providing tsunami impact forecasting following a tsunamigenic earthquake event, based on a probabilistic approach. The workflow integrates real-time earthquake data, runs HPC simulations, and generates tsunami hazard maps.

The main CWL implementation is found in WF6101.cwl, together with ST610106 and ST610109 describing complex steps. The ...

Type: Common Workflow Language

Creator: Marco Salvi

Submitters: Raül Sirvent, Pablo Orviz

Stable

Code and supporting data for the article: "Exploring the role of normalization and feature selection in microbiome disease classification pipelines."

The repository contains the following folders:

  • 1. data: contains OTU/ASV tables and class annotations for the 15 curated datasets considered.
  • 2. src: code writen to perform the analyses from the article and the statistical tests
  • 3. results: tables containing global nested cross validation results
  • 4. figures

License: This

...

Work-in-progress

plant2human workflow

GitHub last commit (branch) Status cwltool License Version ...

Type: Common Workflow Language

Creator: Sora Yonezawa

Submitter: Sora Yonezawa

DOI: 10.48546/workflowhub.workflow.1206.6

Stable

Galaxy workflow for the reproduction of the results published in: Panchal, Monik, Callison, June, Skukauskas, Vainius, Gianolio, Diego, Cibin, Giannantonio, York, Andrew P E, Schuster, Manfred E, Hyde, Timothy I, Collier, Paul, Catlow, C Richard A, Gibson, Emma K (2021) Operando XAFS investigation on the effect of ash deposition on three-way catalyst used in gasoline particulate filters and the effect of the manufacturing process on the catalytic activity DOI: 10.1088/1361-648x/abfe16.

This ...

Stable

Galaxy workflow for the reproduction of the results published in: R. H. Blackmore, M. E. Rivas, G. F. Tierney, K. M. H. .Mohammed, D. Decarolis, S. Hayama, F. Venturini, G. Held, R. Arrigo, M. Amboage, P. Hellier, E. W. Lynch, M. Amri, M. Casavola, T. Eralp Erden, P. Collier, P. P. Wells (2020) The electronic structure, surface properties, and in situ N2O decomposition of mechanochemically synthesised LaMnO3 DOI: 10.1039/d0cp00793e.

This workflow is published as part of the research data submitted ...

Stable

Galaxy workflow for the reproduction of the results published in: S. K. Matam, C. Moffat, P. Hellier, M. Bowker, I. P. Silverwood, C. R. A. .Catlow, S. D. Jackson, J. Craswell, P. P. Wells, S. F. Parker, E. K. Gibson (2021). Investigation of MoOx/Al2O3 under Cyclic Operation for Oxidative and Non-Oxidative Dehydrogenation of Propane DOI: 10.3390/catal10121370.

This workflow is published as part of the research data submitted for the paper Facilitating Reproducibility in Catalysis Research with ...

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