Workflows

What is a Workflow?
736 Workflows visible to you, out of a total of 791
CNVand
Stable

CNVand

Snakemake Conda Docker License [![Contributor ...

Type: Snakemake

Creator: Carlos Classen

Submitter: Carlos Classen

DOI: 10.48546/workflowhub.workflow.1039.1

Monte Carlo Simulation for Pi Estimation

Monte Carlo Pi Estimation Program Description

This program is a Monte Carlo simulation designed to estimate the value of Pi using PyCOMPSs.

Tasks in the Program

  1. Count Points in Circle Task (count_points_in_circle):
  • Generates random points within a square with side length 1.
  • Counts points falling within the inscribed circle (x^2 + y^2 <= 1).
  • Input: Number of points to generate (num_points)
  • Output: Tuple containing count of points within the circle and list of generated ...

Type: COMPSs

Creators: Archit Dabral, Under the guidance of Raül Sirvent

Submitter: Archit Dabral

Theoretical fragment substructure generation and in silico mass spectral library high-resolution upcycling workflow
Work-in-progress

Galaxy Workflow Documentation: MS Finder Pipeline

This document outlines a MSFinder Galaxy workflow designed for peak annotation. The workflow consists of several steps aimed at preprocessing MS data, filtering, enhancing, and running MSFinder.

Step 1: Data Collection and Preprocessing

Collect if the inchi and smiles are missing from the dataset, and subsequently filter out the spectra which are missing inchi and smiles.

1.1 MSMetaEnhancer: Collect InChi, Isomeric_smiles, and Nominal_mass

...

Type: Galaxy

Creators: Zargham Ahmad, Helge Hecht, Elliott J. Price, Research Infrastructure RECETOX RI (No LM2018121) financed by the Ministry of Education, Youth and Sports, and Operational Programme Research, Development and Innovation - project CETOCOEN EXCELLENCE (No CZ.02.1.01/0.0/0.0/17_043/0009632).

Submitters: Helge Hecht, Zargham Ahmad

DOI: 10.48546/workflowhub.workflow.888.2

nf-core/viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

Type: Nextflow

Creators: Sarai Varona and Sara Monzon, Patel H, Varona S and Monzon S

Submitter: WorkflowHub Bot

nf-core/viralintegration

Integration of viral sequences in genomic data

Type: Nextflow

Creators: Alyssa Briggs, Edmund Miller

Submitter: WorkflowHub Bot

nf-core/taxprofiler

Taxonomic classification and profiling of shotgun metagenomic data

Type: Nextflow

Creators: James A. Fellows Yates, Sofia Stamouli, Moritz E. Beber, Lauri Mesilaakso, Thomas A. Christensen II, Jianhong Ou, Mahwash Jamy, Maxime Borry, Rafal Stepien, Tanja Normark

Submitter: WorkflowHub Bot

nf-core/smrnaseq

Small RNA-Seq Best Practice Analysis Pipeline.

Type: Nextflow

Creators: Phil Ewels <phil.ewels@scilifelab.se>, P. Ewels <phil.ewels@scilifelab.se>, P. Ewels, Chuan Wang <chuan.wang@scilifelab.se>, C. Wang <chuan.wang@scilifelab.se>, C. Wang, Rickard Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén <rickard.hammaren@scilifelab.se>, R. Hammarén, Lorena Pantano <lorena.pantano@gmail.com>, L. Pantano <lorena.pantano@gmail.com>, L. Pantano

Submitter: WorkflowHub Bot

nf-core/slamseq

SLAMseq analysis using Slamdunk with various T>C conversion quantifications and QC

Type: Nextflow

Creator: Tobias Neumann

Submitter: WorkflowHub Bot

nf-core/scrnaseq

Pipeline for processing 10x Genomics single cell rnaseq data

Type: Nextflow

Creators: Peter J Bailey, Bailey PJ, Alexander Peltzer, Botvinnik O, Olga Botvinnik, Marques de Almeida F, Peltzer A, Sturm G

Submitter: WorkflowHub Bot

nf-core/sarek

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

Type: Nextflow

Creators: Maxime Garcia, Szilveszter Juhos

Submitter: WorkflowHub Bot

Powered by
 (v.1.16.0-main)
About WorkflowHub | Acknowledgements | Credits | Terms & Conditions | Privacy Policy | Cite us | Contact us
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH