Workflows

WF3- Peptide verification/validaiton workflow

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 3: Verification, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

DIA Analysis Training using HEK Ecoli data in OSW

Associated Tutorial

This workflows is part of the tutorial DIA Analysis using OpenSwathWorkflow, available in the GTN

Thanks to...

Tutorial Author(s): Matthias Fahrner, [Melanie ...

DIA MSstats Training msstats input tabular

Associated Tutorial

This workflows is part of the tutorial Statistical analysis of DIA data, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Matthias ...

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 1: Database-Generation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): [Subina ...

Workflow for running LotuS2 tool on fungal ITS paired-end sequencing data, to identify the fungi present in the samples

Associated Tutorial

This workflows is part of the tutorial Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2, available in the GTN

Features

• Includes [Galaxy Workflow ...

metaquantome-taxonomy

Associated Tutorial

This workflows is part of the tutorial metaQuantome 3: Taxonomy, available in the GTN

Thanks to...

Tutorial Author(s): Subina Mehta, Timothy J. Griffin, ...

DIA MSstats Training export tabular

Associated Tutorial

This workflows is part of the tutorial Statistical analysis of DIA data, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Matthias ...

Annotating the novel peptides

Associated Tutorial

This workflows is part of the tutorial Neoantigen 5: Variant Annotation, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

Workflow Author(s): ...

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data (short), available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Mass spectrometry imaging: Loading and exploring MSI data

Associated Tutorial

This workflows is part of the tutorial Mass spectrometry imaging: Loading and exploring MSI data, available in the GTN

Thanks to...

Tutorial Author(s): Melanie Föll, ...