Workflows

Generating a large database and then reducing it to a compact database using Metanovo

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 1: Database-Generation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): [Subina ...

16S rRNA analysis with Nanopore reads

Associated Tutorial

This workflows is part of the tutorial 16S Microbial analysis with Nanopore data, available in the GTN

Thanks to...

Tutorial Author(s): Cristóbal Gallardo

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Analyses of metagenomics data - The global picture

Associated Tutorial

This workflows is part of the tutorial Analyses of metagenomics data - The global picture, available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, [Bérénice ...

encyclopedia- DIA Metaproteomics

Associated Tutorial

This workflows is part of the tutorial EncyclopeDIA, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a Galaxy Workflow Report ...

This workflow performs taxonomic profiling of metagenomic data and visualizes microbial community composition using Kraken2 and Bracken as well as MetaPhlAn.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Profiling and Visualization of Metagenomic Data, available in the GTN

Features

• Includes [Galaxy Workflow ...

Quantification using the MaxQuant tool

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 4: Quantitation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

This workflow query metagenomic raw data against a metaplasmidome database to identify plasmids and annotate them with genes, KO, PFAM

Associated Tutorial

This workflows is part of the tutorial Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data, available in the GTN ...

Proteogenomics 3: Novel peptide analysis

Associated Tutorial

This workflows is part of the tutorial Proteogenomics 3: Novel peptide analysis, available in the GTN

Features

• Includes a Galaxy Workflow Report

Thanks to...

...

Associated Tutorial

This workflows is part of the tutorial Metatranscriptomics analysis using microbiome RNA-seq data, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Uses subworkflows ...

16S Microbial Analysis with mothur (extended)

Associated Tutorial

This workflows is part of the tutorial 16S Microbial Analysis with mothur (extended), available in the GTN

Thanks to...

Tutorial Author(s): Saskia Hiltemann, [Bérénice ...