Workflows

Nextflow80

Metagenomics9 rna8 nanopore7 rna-seq7 Proteomics6 variant-calling6 Genomics5 single-cell5 Assembly4 illumina4 microbiome4 openms4 10xgenomics3 ATAC-seq3 denovo-assembly3 DNA3 FASTQ3 long-read-sequencing3 mass-spectrometry3 taxonomic-classification3 taxonomic-profiling3 10x-genomics2 adna2 Alignment2 Annotation2 ChIP-seq2 demultiplexing2 differential-expression2 eDNA2 GATK42 genome-assembly2 image-processing2 long-reads2 Metabarcoding2 nanopore-sequencing2 NGS2 pacbio2 peak-calling2 proteogenomics2 quantification2 shotgun2 star-solo2 training2 transcriptome2 Transcriptomics2 Virus2 WGS2 16S1 18S1 airr1 alevin1 alphafold21 alternative-splicing1 amp1 Amplicon1 amplicon-sequencing1 ampliconarchitect1 ampliconsuite1 AMR1 ancient-dna1 ancient-dna-analysis1 ancientdna1 antibiotic-resistance1 antimicrobial-peptides1 antimicrobial-resistance-genes1 arg1 ARTIC1 atac1 b-cell1 bacteria1 bacterial1 bacterial-genome-analysis1 bacterial-genomes1 bamtofastq1 bases2fastq1 bcl2fastq1 bgc1 binning1 biosynthetic-gene-clusters1 bisulfite-sequencing1 bustools1 BWA-mem1 bwa-mem21 cage1 cage-seq1 cageseq-data1 cancer1 cell-lines1 Cellranger1 chimeric-alignment1 ChIP1 chromatin-accessibiity1 chromatin-immunoprecipitation1 chromosome-conformation-capture1 circle-seq1 circular1 Classification1 clip1 clip-seq1 comparative-genomics1 Consensus1 contigs1 Conversion1 coprolite1 corruption1 cosmic1 covid-191 covid191 cramtofastq1 crispr1 crispr-analysis1 crispr-cas1 cross-validation1 ctat1 cutandrun1 cutandrun-seq1 cutandtag1 cutandtag-seq1 cytometry1 data-cleaning1 data-independent-proteomics1 data-recovery1 ddbj1 de-identification1 decontamination1 deep-learning1 deep-variant1 demo1 denovo1 deseq21 dia1 dia-proteomics1 diagnostics1 differential-abundance1 dna-methylation1 dot-plot1 download1 drug-response1 drug-response-prediction1 drugs1 dualrna-seq1 earth-observation1 eccdna1 ecdna1 elementbiosciences1 em-seq1 ena1 epigenome1 Epigenomics1 epitope1 epitope-prediction1 eukaryotes1 evolution1 evolutionary-tree1 extrachromosomal-circular-dna1 facs-sorting1 fair-principles1 fastq-corrupted1 fastq-format1 FastQC1 filter1 fish1 function1 fusion1 fusion-genes1 gene-expression1 gene-fusion1 generalization1 genome1 genomics-visualization1 genotype1 geo1 Germline1 ggbio1 gnomad1 google1 gro-seq1 gsea1 Hi-C1 HiC1 hicar1 hla1 hla-typing1 horizontal-gene-transfer1 host-pathogen1 hybrid-assembly1 hyperparameter-tuning1 identification1 image-analysis1 image-segmentation1 imaging1 immcantation1 immunology1 immunorepertoire1 imputation1 iontorrent1 isoseq1 isoseq-31 ITS1 k-mer1 kallisto1 kmer1 kmer-counting1 kmer-frequency-count1 kraken21 krona1 label-free-quantification1 landsat1 last1 lfq1 limma1 linked-reads1 long-read1 low-pass-sequencing1 machine-learning1 macs21 mapping1 MARS-seq1 mass-spec1 Metabolomics1 metagenomes1 metatranscriptomics1 methyl-seq1 mhc1 mhc-binding-prediction1 microarray1 minimal-example1 mnase-seq1 molecular-pixelation1 molecularcartography1 ms11 ms21 Multi-omics1 MultiQC1 nanostring1 nanostringnorm1 nascent1 natural-products1 nucleosome1 nucleosome-maps1 nucleosome-positioning1 ONT1 optitype1 oxford-nanopore1 pairwise-alignment1 pangenome1 pathogen1 pathogen-genomics1 pbat1 peptides1 personalized-medicine1 phasing1 phylogenetic-placement1 phylogenetics1 phylogeny1 pixelator1 pixelgen-technologies1 population-genetics1 pre-processing1 pro-seq1 Profiling1 prokaryotes1 protein-databases1 protein-families1 protein-fold-prediction1 protein-folding1 protein-sequences1 protein-structure1 proteins1 puretarget1 pypgatk1 QC1 qiime21 quantseq1 randomization-tests1 rare-disease1 readmapping1 reads-interleaving1 recovery-tool1 repseq1 rna-rbp-interactions1 RNASEQ1 robustness-assessment1 rrbs1 rrna1 SAMTools1 SARS-CoV-21 satellite-imagery1 screening1 scRNA-seq1 secondary-metabolites1 Segmentation1 sequence-classification1 shiny1 short-reads1 single-cell-omics1 single-cell-rna-seq1 slamseq1 small-rna1 smrna-seq1 snv1 Somatic1 spatial1 spectral-unmixing1 splicing1 sra1 structural-variants1 Supernova1 synapse1 synteny1 tama1 target-panels1 taxonomies1 taxonomy-assignment1 tidyverse1 tmt1 transcription1 transcriptional-dynamics1 tree1 trend-analysis1 trends1 tss1 ultra1 umi1 umis1 unique-molecular-identifier1 unpaired-reads1 variant-annotation1 viral1 viral-integration1 viruses1 virusintegrationfinder1 well-formed1 wes1 whole-exome-sequencing1 whole-genome-alignment1 whole-genome-sequencing1 worflow1 More...

WorkflowHub Bot80

nf-core80

nf-core80

Deprecated4 Work-in-progress1 Stable1