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Nextflow74
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Metagenomics8
rna8
rna-seq8
nanopore7
single-cell6
Proteomics5
variant-calling5
10xgenomics4
Assembly4
Genomics4
illumina4
microbiome4
openms4
10x-genomics3
ATAC-seq3
denovo-assembly3
DNA3
image-processing3
long-read-sequencing3
mass-spectrometry3
taxonomic-classification3
taxonomic-profiling3
Transcriptomics3
adna2
Annotation2
ChIP-seq2
demultiplexing2
differential-expression2
eDNA2
FASTQ2
GATK42
genome-assembly2
long-reads2
Metabarcoding2
nanopore-sequencing2
NGS2
peak-calling2
proteogenomics2
quantification2
shotgun2
spatial2
star-solo2
transcriptome2
Virus2
16S1
18S1
airr1
alevin1
Alignment1
alphafold21
alternative-splicing1
amp1
Amplicon1
amplicon-sequencing1
ampliconarchitect1
ampliconsuite1
AMR1
ancient-dna1
ancient-dna-analysis1
ancientdna1
antibiotic-resistance1
antimicrobial-peptides1
antimicrobial-resistance-genes1
arg1
ARTIC1
atac1
b-cell1
bacteria1
bacterial1
bacterial-genome-analysis1
bacterial-genomes1
bamtofastq1
bases2fastq1
bcl2fastq1
bgc1
binning1
biosynthetic-gene-clusters1
bisulfite-sequencing1
bustools1
BWA-mem1
bwa-mem21
cage1
cage-seq1
cageseq-data1
cancer1
Cellranger1
chimeric-alignment1
ChIP1
chromatin-accessibiity1
chromatin-immunoprecipitation1
chromosome-conformation-capture1
CIRCexplorer21
circle-seq1
circrna1
circRNA_finder1
circular1
CIRIquant1
Classification1
clip1
clip-seq1
comparative-genomics1
Consensus1
contigs1
Conversion1
coprolite1
cosmic1
covid-191
covid191
cramtofastq1
crispr1
crispr-analysis1
crispr-cas1
ctat1
cutandrun1
cutandrun-seq1
cutandtag1
cutandtag-seq1
cytometry1
data-independent-proteomics1
DCC1
ddbj1
de-identification1
decontamination1
deep-variant1
demo1
denovo1
deseq21
dia1
dia-proteomics1
diagnostics1
differential expression1
differential-abundance1
dna-methylation1
dot-plot1
download1
dualrna-seq1
eccdna1
ecdna1
elementbiosciences1
em-seq1
ena1
epigenome1
Epigenomics1
epitope1
epitope-prediction1
eukaryotes1
evolution1
evolutionary-tree1
extrachromosomal-circular-dna1
facs-sorting1
FastQC1
filter1
find_circ1
fish1
function1
fusion1
fusion-genes1
gene-expression1
gene-fusion1
genome1
genomics-visualization1
geo1
Germline1
ggbio1
gnomad1
google1
gro-seq1
gsea1
Hi-C1
HiC1
hicar1
hla1
hla-typing1
horizontal-gene-transfer1
host-pathogen1
hybrid-assembly1
identification1
image-analysis1
image-segmentation1
imaging1
immcantation1
immunology1
immunorepertoire1
iontorrent1
isoseq1
isoseq-31
ITS1
k-mer1
kallisto1
kmer1
kmer-counting1
kmer-frequency-count1
kraken21
krona1
label-free-quantification1
last1
lfq1
limma1
linked-reads1
macs21
mapping1
MapSplice1
MARS-seq1
mass-spec1
Metabolomics1
metagenomes1
metatranscriptomics1
methyl-seq1
mhc1
mhc-binding-prediction1
microarray1
microscopy1
minimal-example1
miRanda1
mirna prediction1
mnase-seq1
molecular-pixelation1
molecularcartography1
ms11
ms21
Multi-omics1
MultiQC1
nanostring1
nanostringnorm1
nascent1
natural-products1
Nextflow1
nucleosome1
nucleosome-maps1
nucleosome-positioning1
ONT1
optitype1
oxford-nanopore1
pacbio1
pairwise-alignment1
pangenome1
pathogen1
pathogen-genomics1
pbat1
peptides1
personalized-medicine1
phylogenetic-placement1
phylogenetics1
phylogeny1
pixelator1
pixelgen-technologies1
population-genetics1
pre-processing1
pro-seq1
Profiling1
prokaryotes1
protein-databases1
protein-fold-prediction1
protein-folding1
protein-sequences1
protein-structure1
proteins1
pypgatk1
QC1
qiime21
quantseq1
rare-disease1
readmapping1
repseq1
rna-rbp-interactions1
RNASEQ1
rrbs1
rrna1
SAMTools1
SARS-CoV-21
screening1
scRNA-seq1
secondary-metabolites1
Segemehl1
Segmentation1
sequence-classification1
shiny1
short-reads1
single-cell-omics1
single-cell-rna-seq1
slamseq1
small-rna1
smrna-seq1
snv1
Somatic1
spatial-transcriptomics1
splicing1
sra1
st1
structural-variants1
Supernova1
synapse1
synteny1
tama1
target-panels1
TargetScan1
taxonomies1
taxonomy-assignment1
tidyverse1
tmt1
training1
transcription1
transcriptional-dynamics1
tree1
tss1
ultra1
umi1
umis1
unique-molecular-identifier1
variant-annotation1
viral1
viral-integration1
viruses1
virusintegrationfinder1
visium1
wes1
WGS1
whole-exome-sequencing1
whole-genome-alignment1
whole-genome-sequencing1
worflow1
More...
Team
nf-core74
Space
nf-core74
Creator
Barry Digby1
74
Workflows visible to you, out of a total of 74
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
Pipeline to run and benchmark multiple sequence alignment tools.
Pairwise alignment pipeline (genome to genome or reads to genome)
A pipeline for de novo transcriptome assembly of short reads from bulk RNA-seq
A pipeline for ortholog fetching and analysis
GATK4 RNA variant calling pipeline
Nextflow rnafusion analysis pipeline, part of the nf-core community.
An analysis pipeline for Molecular Cartography data from Resolve Biosciences.
Methylation (Bisulfite-Sequencing) Best Practice analysis pipeline, part of the nf-core community.