Workflows

What is a Workflow?
74 Workflows visible to you, out of a total of 74

The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs

Type: Nextflow

Creators: Simon Heumos, Michael L Heuer

Submitter: WorkflowHub Bot

Proteogenomics database creation workflow using pypgatk framework.

Type: Nextflow

Creator: Husen M. Umer & Yasset Perez-Riverol

Submitter: WorkflowHub Bot

Deprecated

De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.

Type: Nextflow

Creator: Remi-Andre Olsen (@remiolsen)

Submitter: WorkflowHub Bot

A comprehensive cancer NGS analysis and reporting pipeline

Type: Nextflow

Creator: Stephen Watts

Submitter: WorkflowHub Bot

Nascent Transcription Processing Pipeline

Type: Nextflow

Creators: Ignacio Tripodi, Margaret Gruca

Submitter: WorkflowHub Bot

A Nanostring nCounter analysis pipeline

Type: Nextflow

Creators: Peltzer , Alexander & Mohr, Christopher

Submitter: WorkflowHub Bot

A pipeline to demultiplex, QC and map Nanopore data

Type: Nextflow

Creator: Chelsea Sawyer

Submitter: WorkflowHub Bot

MNase-seq analysis pipeline using BWA and DANPOS2.

Type: Nextflow

Creator: Harshil Patel

Submitter: WorkflowHub Bot

Identify and quantify peptides from mass spectrometry raw data

Type: Nextflow

Creator: Leon Bichmann

Submitter: WorkflowHub Bot

Assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic

Type: Nextflow

Creators: Danilo Di Leo, Emelie Nilsson & Daniel Lundin

Submitter: WorkflowHub Bot

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