Workflows
What is a Workflow?Filters
The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs
Proteogenomics database creation workflow using pypgatk framework.
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
A comprehensive cancer NGS analysis and reporting pipeline
Nascent Transcription Processing Pipeline
A Nanostring nCounter analysis pipeline
A pipeline to demultiplex, QC and map Nanopore data
MNase-seq analysis pipeline using BWA and DANPOS2.
Identify and quantify peptides from mass spectrometry raw data
Assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic