Workflows

What is a Workflow?
74 Workflows visible to you, out of a total of 74

fgbio Best Practices FASTQ to Consensus Pipeline

Type: Nextflow

Creator: Nils Homer

Submitter: WorkflowHub Bot

A fully reproducible and state of the art epitope prediction pipeline.

Type: Nextflow

Creators: Christopher Mohr, Alexander Peltzer

Submitter: WorkflowHub Bot

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Type: Nextflow

Creators: Alexander Peltzer, The nf-core/eager community, Stephen Clayton, James A Fellows-Yates

Submitter: WorkflowHub Bot

Dual RNA-seq pipeline

Type: Nextflow

Creator: Bozena Mika-Gospodorz and Regan Hayward

Submitter: WorkflowHub Bot

Differential abundance analysis

Type: Nextflow

Creators: Oskar Wacker, Jonathan Manning

Submitter: WorkflowHub Bot

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.

Type: Nextflow

Creator: Jannik Seidel

Submitter: WorkflowHub Bot

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

Type: Nextflow

Creator: Leon Bichmann

Submitter: WorkflowHub Bot

Demultiplexing pipeline for Illumina sequencing data

Type: Nextflow

Creators: Chelsea Sawyer, Edmund Miller, Matthias De Smet

Submitter: WorkflowHub Bot

Deprecated

Google DeepVariant variant caller as a Nextflow pipeline

Type: Nextflow

Creator: Phil Palmer

Submitter: WorkflowHub Bot

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes sequencing QC, spike-in normalisation, IgG control normalisation, peak calling and downstream peak analysis.

Type: Nextflow

Creators: Chris Cheshire and Charlotte West, Chris Cheshire, Charlotte West and Tamara Hodgetts

Submitter: WorkflowHub Bot

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