Workflows

What is a Workflow?
74 Workflows visible to you, out of a total of 74

An open-source analysis pipeline to detect germline or somatic variants from whole genome or targeted sequencing

Type: Nextflow

Creators: Maxime Garcia, Szilveszter Juhos

Submitter: WorkflowHub Bot

Alternative splicing analysis using RNA-seq.

Type: Nextflow

Creators: Ben Southgate, James Ashmore

Submitter: WorkflowHub Bot

Analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting)

Type: Nextflow

Creator: Jonathan Manning

Submitter: WorkflowHub Bot

A workflow to simulate reads

Type: Nextflow

Creator: Adam Bennett

Submitter: WorkflowHub Bot

call and score variants from WGS/WES of rare disease patients

Type: Nextflow

Creator: Clinical Genomics Stockholm

Submitter: WorkflowHub Bot

Deprecated

Quantitative Mass Spectrometry nf-core workflow

Type: Nextflow

Creator: Yasset Perez-Riverol

Submitter: WorkflowHub Bot

Proteomics label-free quantification (LFQ) analysis pipeline using OpenMS and MSstats, with feature quantification, feature summarization, quality control and group-based statistical analysis.

Type: Nextflow

Creators: Julianus Pfeuffer, Lukas Heumos, Leon Bichmann, Timo Sachsenberg, Yasset Perez-Riverol

Submitter: WorkflowHub Bot

Protein 3D structure prediction pipeline

Type: Nextflow

Creators: Athanasios Baltzis, Jose Espinosa-Carrasco, Harshil Patel

Submitter: WorkflowHub Bot

Performs phylogenetic placement with EPA-NG

Type: Nextflow

Creator: Daniel Lundin

Submitter: WorkflowHub Bot

Pipeline for analysis of Molecular Pixelation assays

Type: Nextflow

Creator: Pixelgen Technologies AB

Submitter: WorkflowHub Bot

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