Workflows

What is a Workflow?

74 Workflows visible to you, out of a total of 74

nf-core/bcellmagic

nf-core

B/T cell repertoire analysis pipeline with immcantation framework. WIP, currently requires a bunch of changes first.

Type: Nextflow

Creators: Gisela Gabernet, Simon Heumos, Alexander Peltzer

Submitter: WorkflowHub Bot

Created: 4th Jun 2024 at 11:32

nf-core/rnaseq

nf-core

Stable

RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.

Type: Nextflow

Creators: Harshil Patel, Phil Ewels, Rickard Hammarén

Submitter: WorkflowHub Bot

Created: 22nd Jul 2020 at 11:58, Last updated: 4th Jun 2024 at 11:23

nf-core/metaboigniter

nf-core

Work-in-progress

Pre-processing of mass spectrometry-based metabolomics data

Type: Nextflow

Creators: Payam Emami, Payam Emami

Submitter: WorkflowHub Bot

Created: 30th Sep 2020 at 15:51, Last updated: 4th Jun 2024 at 11:22

nf-core/circrna

nf-core

Work-in-progress

nf-core/circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Introduction

nf-core/circrna is a best-practice analysis pipeline for the quantification, miRNA target prediction and differential expression analysis of circular RNAs in paired-end RNA sequencing data.

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes ...

Type: Nextflow

Creator: Barry Digby

Submitter: Barry Digby

Created: 22nd Feb 2022 at 14:51

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nf-core/circrna

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