Workflows

Building an amplicon sequence variant (ASV) table from 16S data using DADA2

Associated Tutorial

This workflows is part of the tutorial Building an amplicon sequence variant (ASV) table from 16S data using DADA2, available in the GTN

Features

• Includes Galaxy Workflow Tests ...

Discovery workflow with SG/PS and MaxQuant to generate microbial peptides

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 2: Discovery, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, ...

workflow-editor

Associated Tutorial

This workflows is part of the tutorial Creating, Editing and Importing Galaxy Workflows, available in the GTN

Thanks to...

Tutorial Author(s): Marius van den Beek

[![gtn star logo followed by the word ...

Peptide Library Data Analysis

Associated Tutorial

This workflows is part of the tutorial Peptide Library Data Analysis, available in the GTN

Thanks to...

Tutorial Author(s): Jayadev Joshi, [Daniel ...

Associated Tutorial

This workflows is part of the tutorial Assembly of metagenomic sequencing data, available in the GTN

Thanks to...

Tutorial Author(s): Polina Polunina, Bérénice Batut ...

workflow-automation

Associated Tutorial

This workflows is part of the tutorial Automating Galaxy workflows using the command line, available in the GTN

Thanks to...

Workflow Author(s): Wolfgang Maier

Tutorial Author(s): Simon Bray, [Wolfgang ...

Associated Tutorial

This workflows is part of the tutorial Multiomics data analysis using MultiGSEA, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a Galaxy Workflow Report ...

This Galaxy workflow streamlines comprehensive copy number variation (CNV) analysis by integrating CNVkit’s robust detection capabilities with an efficient conversion step using cnv-vcf2json to format results into Beacon JSON. Designed for computational biologists and bioinformaticians, the workflow standardizes CNV identification and output formatting to enhance interoperability with Beacon networks. It is specifically optimized for use with mapped BAM files from the EGAD00001008392 synthetic ...

Second part of the ecoregionalization

This workflow allows you to create an ecoregionalization map from occurrences and environmental data using a boosted regression trees model for predictions.

The workflow is intended for processing occurrence data, which should include latitude, longitude and species presence or absence. You can use example test data available with the workflow, highlighting a use case centered on the Dumont d'Urville sea region and benthic invertebrates. The primary goal of ...

Part 1 of ecoregionalization workflow

This workflow allows you to create an ecoregionalization map from occurrences and environmental data using a boosted regression trees model for predictions.

The workflow is intended for processing occurrence data, which should include latitude, longitude and species presence or absence. You can use example test data available with the workflow, highlighting a use case centered on the Dumont d'Urville sea region and benthic invertebrates. The primary goal of ...