Workflow Type: Galaxy
Open
Stable
Metagenomic dataset taxonomic classification using kraken2
Inputs
ID | Name | Description | Type |
---|---|---|---|
Data_R1.fastq | Data_R1.fastq | n/a |
|
Data_R2.fastq | Data_R2.fastq | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | Kraken2: taxonomic prediction | provide different taxonomic prediction with several false positive. WARNING: consider changing the database toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy0 |
3 | Convert kraken file | just re-arrange the column of the tabular file so it can be ready for krona representation toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2 |
4 | Krona pie chart | Improve kraken2 taxonomic result representation in a HTLM report toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Kraken_report | Kraken_report | n/a |
|
Kraken_taxonomy_table | Kraken_taxonomy_table | n/a |
|
Kraken_taxonomy_table_modified | Kraken_taxonomy_table_modified | n/a |
|
Taxonomic_prediction_report | Taxonomic_prediction_report | n/a |
|
Version History
Version 1 (earliest) Created 4th Feb 2021 at 09:07 by johan Rollin
Added/updated 1 files
Open
master
26feb9a
Creators and Submitter
Creators
Not specifiedSubmitter
Tools
License
Activity
Views: 3948 Downloads: 288 Runs: 0
Created: 4th Feb 2021 at 09:07
Last updated: 17th Jun 2021 at 10:10
Attributions
None