Workflow Type: Galaxy
Open
Stable
This workflow is used to process timeseries from meteorological stations in Finland but can be applied to any timeseries according it follows the same format.
Take a temperature timeseries from any meteorological station. Input format is csv and it must be standardized with 6 columns:
- Year (ex: 2021)
- month (ex: 1)
- day (ex: 15)
- Time (ex: 16:56)
- Time zone (such as UTC)
- Air temperature (degC)
Inputs
ID | Name | Description | Type |
---|---|---|---|
Temperature timeseries (csv) | Temperature timeseries (csv) | Data is usually sampled at a higher frequency (from second to a few minutes). The dataset must contain 6 columns: 1. Year 2.m 3.d 4.Time 5.Time zone (such as UTC) 6. Air temperature (degC) |
|
Steps
ID | Name | Description |
---|---|---|
1 | Convert CSV to tabular | csv_to_tabular |
2 | Merge date columns to YYYYMMDD | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 |
3 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 |
4 | Prepare daiky means | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
5 | Daily mean | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
6 | Monthly mean | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 |
7 | Positive only | Filter1 |
8 | Negative only | Filter1 |
9 | Daily climate stripes | toolshed.g2.bx.psu.edu/repos/climate/climate_stripes/climate_stripes/1.0.1 |
10 | Monthly climate stripes | toolshed.g2.bx.psu.edu/repos/climate/climate_stripes/climate_stripes/1.0.1 |
11 | Prepare bar chart | toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3 |
12 | bar char for daily temperatures (C) | barchart_gnuplot |
Outputs
ID | Name | Description | Type |
---|---|---|---|
daily_mean_timeseries | daily_mean_timeseries | n/a |
|
monthly_mean_timeseries | monthly_mean_timeseries | n/a |
|
stripes_daily_temperatures | stripes_daily_temperatures | n/a |
|
stripes_monthly_temperatures | stripes_monthly_temperatures | n/a |
|
daily_barchart | daily_barchart | n/a |
|
Version History
Version 1 (earliest) Created 23rd May 2021 at 20:28 by Anne Fouilloux
Added/updated 1 files
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Views: 3688 Downloads: 263 Runs: 0
Created: 23rd May 2021 at 20:28
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