Workflow Type: Galaxy
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Metagenomic dataset taxonomic classification using kraken2
Steps
ID | Name | Description |
---|---|---|
0 | Kraken2: taxonomic prediction | provide different taxonomic prediction with several false positive. WARNING: consider changing the database toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy0 |
1 | Convert kraken file | just re-arrange the column of the tabular file so it can be ready for krona representation toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2 |
2 | Krona pie chart | Improve kraken2 taxonomic result representation in a HTLM report toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0 |
Outputs
ID | Name | Description | Type |
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Kraken_report | Kraken_report | n/a |
|
Kraken_taxonomy_table | Kraken_taxonomy_table | n/a |
|
Kraken_taxonomy_table_modified | Kraken_taxonomy_table_modified | n/a |
|
Taxonomic_prediction_report | Taxonomic_prediction_report | n/a |
|
Version History
Version 1 (earliest) Created 17th Jun 2021 at 10:14 by johan Rollin
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Created: 17th Jun 2021 at 10:14
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