PATH2XNAT ST workflow Xenium non-diseased lung test data analysis
Version 1

Workflow Type: Galaxy
Stable

The Spatial Transcriptomics analysis workflow for Xenium data from the PATH2XNAT project tested on the non-diseased lung dataset from 10X genomics. The analysis workflow written in R and executed in the interactive RStudio environment consists of visualizations, clustering, feature selection and cluster annotation.

Click and drag the diagram to pan, double click or use the controls to zoom.

Inputs

ID Name Description Type
Non_diseased_lung_minimal_RDS n/a n/a
  • File
Non_diseased_lung_minimal_zip n/a n/a
  • File
Xenium_hLung_v1_metadata_csv n/a n/a
  • File
test_RData n/a n/a
  • File
test_RHistory n/a n/a
  • File
workspace_RData n/a n/a
  • File
workspace_RHistory n/a n/a
  • File

Steps

ID Name Description
7_RStudio n/a n/a

Version History

Version 1 (earliest) Created 24th Jul 2025 at 10:16 by Myrthe van Baardwijk

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Created: 24th Jul 2025 at 10:16

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