PATH2XNAT ST workflow Xenium non-diseased lung test data analysis
Version 1

Workflow Type: Galaxy

Stable

The Spatial Transcriptomics analysis workflow for Xenium data from the PATH2XNAT project tested on the non-diseased lung dataset from 10X genomics. The analysis workflow written in R and executed in the interactive RStudio environment consists of visualizations, clustering, feature selection and cluster annotation.

Training materials elaborating on this analysis workflows can be found in this GitHub repository: https://github.com/HCGB-IGTP/PATH2XNAT/tree/main.

This workflow was developed in the PATH2XNAT joint research action within the ISIDORe project. ISIDORe has received funding from the European Union’s Horizon Europe research and innovation programme under grant agreement number 101046133.

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SEEK ID: https://workflowhub.eu/workflows/1831?version=1

Inputs

ID	Name	Description	Type
Non_diseased_lung_minimal_RDS	n/a	n/a	File
Non_diseased_lung_minimal_zip	n/a	n/a	File
Xenium_hLung_v1_metadata_csv	n/a	n/a	File
test_RData	n/a	n/a	File
test_RHistory	n/a	n/a	File
workspace_RData	n/a	n/a	File
workspace_RHistory	n/a	n/a	File