Workflow Type: Galaxy
Open
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The Spatial Transcriptomics analysis workflow for Xenium data from the PATH2XNAT project tested on the non-diseased lung dataset from 10X genomics. The analysis workflow written in R and executed in the interactive RStudio environment consists of visualizations, clustering, feature selection and cluster annotation.
Click and drag the diagram to pan, double click or use the controls to zoom.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Non_diseased_lung_minimal_RDS | n/a | n/a |
|
Non_diseased_lung_minimal_zip | n/a | n/a |
|
Xenium_hLung_v1_metadata_csv | n/a | n/a |
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test_RData | n/a | n/a |
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test_RHistory | n/a | n/a |
|
workspace_RData | n/a | n/a |
|
workspace_RHistory | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
7_RStudio | n/a | n/a |
Version History
Version 1 (earliest) Created 24th Jul 2025 at 10:16 by Myrthe van Baardwijk
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Views: 39 Downloads: 9 Runs: 1
Created: 24th Jul 2025 at 10:16

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