Alignment and Phylogeny
Version 1

Workflow Type: Galaxy

A workflow for performing alignment and phylogeny using protein sequences when studying genes/gene families.

Inputs

ID Name Description Type
Outgroup sequences (AA) Outgroup sequences (AA) n/a
  • File
Query sequences (AA) Reference/Query sequences (AA) n/a
  • File
Selected sequences (AA) Selected sequences (AA) n/a
  • File

Steps

ID Name Description
3 FASTA Merge Files and Filter Unique Sequences toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0
4 MAFFT toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.526+galaxy1
5 ClipKIT. Alignment trimming software for phylogenetics. toolshed.g2.bx.psu.edu/repos/padge/clipkit/clipkit/0.1.0
6 IQ-TREE toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.4.0+galaxy1

Version History

Version 1 (earliest) Created 27th Jul 2025 at 09:49 by Avani Bhojwani

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Created: 27th Jul 2025 at 09:49

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