Workflow Type: Snakemake
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A hecatomb is a great sacrifice or an extensive loss. Heactomb the software empowers an analyst to make data driven decisions to 'sacrifice' false-positive viral reads from metagenomes to enrich for true-positive viral reads. This process frequently results in a great loss of suspected viral sequences / contigs.
For information about installation, usage, tutorial etc please refer to the documentation: https://hecatomb.readthedocs.io/en/latest/
Quick start guide
Install Hecatomb from Bioconda
# create an env called hecatomb and install Hecatomb in it
conda create -n hecatomb -c conda-forge -c bioconda hecatomb
# activate conda env
conda activate hecatomb
# check the installation
hecatomb -h
# download the databases - you only have to do this once
hecatomb install
# Run the test dataset
hecatomb run --test
Version History
Version 1 (earliest) Created 11th Nov 2021 at 03:37 by Michael Roach
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Creator
Additional credit
Scott Handley, Rob Edwards
Submitter
Citation
Roach, M. (2024). Hecatomb. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.235.1
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Views: 2115 Downloads: 126
Created: 11th Nov 2021 at 03:37
Last updated: 13th May 2024 at 03:08
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