Workflow Type: Common Workflow Language
Work-in-progress
No description specified

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Inputs

ID Name Description Type
running_step n/a n/a
  • int
loadDataR n/a n/a
  • File
barcodes n/a n/a
  • File
features n/a n/a
  • File
matrix n/a n/a
  • File
minCells n/a n/a
  • int
minFeatures n/a n/a
  • int
projectName n/a n/a
  • string
pattern n/a n/a
  • string
filterDataR n/a n/a
  • File
nFeatureRNAmin n/a n/a
  • string
nFeatureRNAmax n/a n/a
  • string
nCountRNAmin n/a n/a
  • string
nCountRNAmax n/a n/a
  • string
percentMTmin n/a n/a
  • string
percentMTmax n/a n/a
  • string
normalizeDataR n/a n/a
  • File
normalization_method n/a n/a
  • string
scale_factor n/a n/a
  • string
margin n/a n/a
  • string
block_size n/a n/a
  • string
verbose n/a n/a
  • string
featureSelectionDataR n/a n/a
  • File
selection_method n/a n/a
  • string
loess_span n/a n/a
  • string
clip_max n/a n/a
  • string
num_bin n/a n/a
  • string
binning_method n/a n/a
  • string
num_features n/a n/a
  • string
scaleDataR n/a n/a
  • File
runPCAR n/a n/a
  • File
findNeighborsR n/a n/a
  • File
neighbors_method n/a n/a
  • string
k n/a n/a
  • string
clusterDataR n/a n/a
  • File
runUmapR n/a n/a
  • File
runTSNER n/a n/a
  • File
find_markersR n/a n/a
  • File

Steps

ID Name Description
loadData n/a n/a
filterData n/a n/a
normalizeData n/a n/a
findFeatures n/a n/a
scaleData n/a n/a
runPCA n/a n/a
findNeighbors n/a n/a
clusterData n/a n/a
runUMAP n/a n/a
runTSNE n/a n/a
findAllMarkers n/a n/a

Outputs

ID Name Description Type
loadDataOutput n/a n/a
  • File
loadDataPlot n/a n/a
  • File
filterDataOutput n/a n/a
  • File
filterDataPlot n/a n/a
  • File
normalizeDataOutput n/a n/a
  • File
findFeaturesOutput n/a n/a
  • File
findFeaturesPlot n/a n/a
  • File
scaleDataOutput n/a n/a
  • File
runPCAOutput n/a n/a
  • File
runPCAPlot1 n/a n/a
  • File
runPCAPlot2 n/a n/a
  • File
runPCAPlot3 n/a n/a
  • File
findNeighborsOutput n/a n/a
  • File
clusterDataOutput n/a n/a
  • File
runUMAPOutput n/a n/a
  • File
runUMAPOutputPlot n/a n/a
  • File
runTSNEOutput n/a n/a
  • File
findMarkersOutput n/a n/a
  • File

Version History

master @ f44e9e1 (latest) Created 14th Apr 2022 at 14:28 by panou@fleming.gr Panou

"test"


Frozen master f44e9e1

Version 1 (earliest) Created 4th Apr 2022 at 05:43 by panou@fleming.gr Panou

Initial commit


Frozen Version-1 476cc32
help Creators and Submitter
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Views: 2256   Downloads: 329

Created: 4th Apr 2022 at 05:43

Last updated: 14th Apr 2022 at 14:28

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Total size: 17.2 MB
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