Workflow Type: Galaxy
Open
Genome assembly: Flye-based WF for highly repetitive genomes [Schmid et al. NAR 2018]
Inputs
ID | Name | Description | Type |
---|---|---|---|
PkorrP19E3_ONT_fast5.tar.gz | PkorrP19E3_ONT_fast5.tar.gz | n/a |
|
SRR6982805.fastq | ftp://biftp.informatik.uni-freiburg.de/pub/T0/Ahrens/SRR6982805.fastq | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | filtlong | toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0 |
3 | Assembly | toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.3.5 |
4 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12 |
5 | BAM-to-SAM | toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 |
6 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1 |
7 | Nanopolish variants | toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0 |
Version History
Version 1 (earliest) Created 5th Aug 2020 at 14:01 by Willem de Koning
Added/updated 1 files
Open
master
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Creators and Submitter
Creators
Not specifiedAdditional credit
Milad Miladi
Submitter
Tools
License
Activity
Views: 4205 Downloads: 277 Runs: 2
Created: 5th Aug 2020 at 14:01
Attributions
None