ONT -- Assembly-Flye-AhrensLab
Version 1

Workflow Type: Galaxy

Genome assembly: Flye-based WF for highly repetitive genomes [Schmid et al. NAR 2018]

Inputs

ID Name Description Type
PkorrP19E3_ONT_fast5.tar.gz PkorrP19E3_ONT_fast5.tar.gz n/a
  • File
SRR6982805.fastq ftp://biftp.informatik.uni-freiburg.de/pub/T0/Ahrens/SRR6982805.fastq n/a
  • File

Steps

ID Name Description
2 filtlong toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0
3 Assembly toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.3.5
4 Map with minimap2 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12
5 BAM-to-SAM toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1
6 Racon toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1
7 Nanopolish variants toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0

Version History

Version 1 (earliest) Created 5th Aug 2020 at 14:01 by Willem de Koning

Added/updated 1 files


Open master ccb331f
help Creators and Submitter
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Additional credit

Milad Miladi

Submitter
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Views: 4205   Downloads: 277   Runs: 2

Created: 5th Aug 2020 at 14:01

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