SARS-CoV-2 ONT Amplicon Sequencing SANBI 1.0
Version 1

Workflow Type: Galaxy
No description specified

Inputs

ID Name Description Type
Maximum read length Maximum read length n/a
  • int?
Medaka model Medaka model n/a
  • string?
Minimum read length Minimum read length n/a
  • int?
Primer BED file Primer BED file n/a
  • File
Reference genome Reference genome n/a
  • File
Sequence Reads Sequence Reads n/a
  • File[]

Steps

ID Name Description
6 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.41.0+galaxy0
7 Read It and Keep toolshed.g2.bx.psu.edu/repos/iuc/read_it_and_keep/read_it_and_keep/0.2.2+galaxy0
8 ARTIC guppyplex toolshed.g2.bx.psu.edu/repos/iuc/artic_guppyplex/artic_guppyplex/1.2.1+galaxy2
9 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.41.0+galaxy0
10 ARTIC minion toolshed.g2.bx.psu.edu/repos/iuc/artic_minion/artic_minion/1.2.1+galaxy0

Version History

Version 1 (earliest) Created 29th Jun 2023 at 13:07 by Peter van Heusden

Initial commit


Open master 8fa1b76
help Creators and Submitter
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Views: 3399   Downloads: 202   Runs: 0

Created: 29th Jun 2023 at 13:07

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Total size: 19.3 KB
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