Workflow Type: Common Workflow Language
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Complete workflow for TANGO as reported in Lecomte et al (2024), "Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling", Metabolic Eng. 83:24-38 https://doi.org/10.1016/j.ymben.2024.02.014
- Parameters for individual models are obtained by optimization
- Individual dynamics and community dynamics are simulated
- Figures for the manuscript are assembled from the results.
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Inputs
ID | Name | Description | Type |
---|---|---|---|
community | n/a | n/a |
|
pure_culture | n/a | n/a |
|
which_figures | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
dynamics | n/a | n/a |
mkdir_figures | n/a | n/a |
mkdir_models | n/a | n/a |
mkdir_results | n/a | n/a |
optimize | n/a | n/a |
plot_figures | n/a | n/a |
Outputs
ID | Name | Description | Type |
---|---|---|---|
figures | n/a | n/a |
|
results | n/a | n/a |
|
Version History
Version 0.9.0 (earliest) Created 3rd May 2024 at 08:03 by David James Sherman
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Version-0.9.0
fd9ed7e
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Views: 669 Downloads: 124
Created: 3rd May 2024 at 08:03
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