Tango: Numerical reconciliation of bacterial fermentation in cheese production
Version 0.9.0

Workflow Type: Common Workflow Language
Stable

Complete workflow for TANGO as reported in Lecomte et al (2024), "Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling", Metabolic Eng. 83:24-38 https://doi.org/10.1016/j.ymben.2024.02.014

  1. Parameters for individual models are obtained by optimization
  2. Individual dynamics and community dynamics are simulated
  3. Figures for the manuscript are assembled from the results.

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Inputs

ID Name Description Type
community n/a n/a
  • array containing
    • record containing
    pure_culture n/a n/a
    • array containing
      • record containing
      which_figures n/a n/a
      • array containing
        • string

      Steps

      ID Name Description
      dynamics n/a n/a
      mkdir_figures n/a n/a
      mkdir_models n/a n/a
      mkdir_results n/a n/a
      optimize n/a n/a
      plot_figures n/a n/a

      Outputs

      ID Name Description Type
      figures n/a n/a
      • Directory
      results n/a n/a
      • Directory

      Version History

      Version 0.9.0 (earliest) Created 3rd May 2024 at 08:03 by David James Sherman

      Initial commit


      Frozen Version-0.9.0 fd9ed7e
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      Views: 669   Downloads: 124

      Created: 3rd May 2024 at 08:03

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