Workflows

What is a Workflow?

736 Workflows visible to you, out of a total of 791

A workflow for marine Genomic Observatories data analysis

emo-bon

Stable

metaGOflow: A workflow for marine Genomic Observatories' data analysis

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An EOSC-Life project

The workflows developed in the framework of this project are based on pipeline-v5 of the MGnify resource.

This branch is a child of the pipeline_5.1 branch that contains all CWL descriptions of the MGnify ...

Type: Common Workflow Language

Creators: Haris Zafeiropoulos, Martin Beracochea

Submitter: Haris Zafeiropoulos

DOI: 10.48546/workflowhub.workflow.384.3

Created: 19th Sep 2022 at 19:00, Last updated: 16th May 2023 at 23:00

ZARP: An automated workflow for processing of RNA-seq data

Zavolan Lab

ZARP

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Type: Snakemake

Creator: Zavolan Lab

Submitter: Zavolan Lab

DOI: 10.48546/workflowhub.workflow.447.1

Created: 21st Mar 2023 at 13:07, Last updated: 12th May 2023 at 16:33

Galaxy ABC MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.299.3

Created: 29th Mar 2022 at 11:43, Last updated: 3rd May 2023 at 14:54

Galaxy Amber Protein Ligand Complex MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.298.3

Created: 25th Mar 2022 at 11:42, Last updated: 3rd May 2023 at 14:52

Galaxy Amber Protein MD Setup tutorial

BioBB Building Blocks

Stable

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.297.3

Created: 25th Mar 2022 at 10:10, Last updated: 3rd May 2023 at 14:50

Galaxy Protein-ligand Docking tutorial (Fpocket)

BioBB Building Blocks

Stable

Protein-ligand Docking tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

This tutorials aim to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb). The particular examples used are based on the Mitogen-activated protein kinase 14 (p38-α) protein (PDB code ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.296.3

Created: 24th Mar 2022 at 14:58, Last updated: 3rd May 2023 at 14:48

Galaxy GMX Automatic Ligand Parameterization tutorial

BioBB Building Blocks

Stable

Automatic Ligand parameterization tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

This tutorial aims to illustrate the process of ligand parameterization for a small molecule, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Sulfasalazine protein (3-letter code SAS), ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.294.3

Created: 24th Mar 2022 at 14:09, Last updated: 3rd May 2023 at 14:44

Galaxy Protein MD Setup tutorial

BioBB Building Blocks

Stable

Protein MD Setup tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Based on the official GROMACS tutorial.

This tutorial aims to illustrate the process of setting up a simulation system containing a protein, step by step, using the **BioExcel Building Blocks library ...

Type: Galaxy

Creators: Adam Hospital, Genís Bayarri

Submitter: Genís Bayarri

DOI: 10.48546/workflowhub.workflow.277.3

Created: 14th Mar 2022 at 10:15, Last updated: 3rd May 2023 at 14:41

Katdetectr

Stable

Introduction

katdetectr is an R package for the detection, characterization and visualization of localized hypermutated regions, often referred to as kataegis.

Please see the Application Note (under submission) for additional background, details and performance evaluations of katdetectr.

The general workflow of katdetectr can be summarized as follows:

Import of genomic variants; VCF, MAF or VRanges objects.
Detection ...

Type: Unrecognized workflow type

Creators: Daan Hazelaar, Job van Riet

Submitter: Daan Hazelaar

DOI: 10.48546/workflowhub.workflow.463.1

Created: 2nd May 2023 at 12:51, Last updated: 2nd May 2023 at 12:54

multiAffinity

iPC: individualizedPaediatricCure

Stable

MultiAffinity enables the study of how gene dysregulation propagates on a multilayer network on a disease of interest, uncovering key genes. Find the detailed documentation for the tool here.

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Type: Common Workflow Language

Creators: Laura Rodriguez-Navas, Mar Batlle

Submitter: Laura Rodriguez-Navas

Download

Created: 14th Dec 2021 at 10:01, Last updated: 21st Apr 2023 at 12:06

Workflows

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metaGOflow: A workflow for marine Genomic Observatories' data analysis

An EOSC-Life project

ZARP

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

AMBER Protein MD Setup tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Protein-ligand Docking tutorials using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Automatic Ligand parameterization tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Protein MD Setup tutorial using BioExcel Building Blocks (biobb)

This workflow must be run in biobb.usegalaxy.es. Please, click here to access.

Introduction

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