Workflows

Introduction to Genomics and Galaxy

Associated Tutorial

This workflows is part of the tutorial Introduction to Genomics and Galaxy, available in the GTN

Thanks to...

Tutorial Author(s): Dave Clements, [Cristóbal ...

Workflow associated with this training: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Combining single cell datasets after pre-processing, available in the GTN

Features

• Includes ...

A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment

Associated Tutorial

This workflows is part of the tutorial From small to large-scale genome comparison, available in the GTN

Thanks to...

Tutorial Author(s): Esteban Perez-Wohlfeil ...

This workflow creates bulk ESet objects from uploaded raw matrix & metadata files

Associated Tutorial

This workflows is part of the tutorial Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution, available in the GTN

Features

• Uses subworkflows ...

NGS data logistics

Associated Tutorial

This workflows is part of the tutorial NGS data logistics, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...

Masking repeats in a genome using RepeatMasker

Associated Tutorial

This workflows is part of the tutorial Masking repeats with RepeatMasker, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Workflow Author(s): Anthony ...

Updated March 2024

Associated Tutorial

This workflows is part of the tutorial Combining single cell datasets after pre-processing, available in the GTN

Thanks to...

Workflow Author(s): Julia Jakiela, Wendi Bacon

Tutorial Author(s): Wendi Bacon ...

This workflow is for the training material: https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_alevin/tutorial.html

Associated Tutorial

This workflows is part of the tutorial Generating a single cell matrix using Alevin, available in the GTN

Features

• Includes a [Galaxy Workflow ...

introduction

Associated Tutorial

This workflows is part of the tutorial Galaxy Basics for everyone, available in the GTN

Features

• Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): [Anne ...

Creates input file for Filter, Plot, Explore tutorial

Associated Tutorial

This workflows is part of the tutorial Importing files from public atlases, available in the GTN

Features

• Includes Galaxy Workflow Tests
• Includes a [Galaxy Workflow ...