Marine Omics identifying biosynthetic gene clusters
Version 1

Workflow Type: Galaxy

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

Click and drag the diagram to pan, double click or use the controls to zoom.

Inputs

ID Name Description Type
Fasta nucelotide file n/a BGC0001472.fna
  • File

Steps

ID Name Description
Prodigal Gene Predictor n/a Create the protein fasta file
Sanntis: Build Genbank n/a Use of Sanntis
Regex Find And Replace n/a Remove useless * in the protein fasta file
InterProScan n/a Create TSV file for Sanntis
Sanntis: identify biosynthetic gene clusters n/a n/a

Outputs

ID Name Description Type
Protein fasta file n/a n/a
  • File
Genbank file n/a n/a
  • File
Clean protein fasta file n/a n/a
  • File
Tabular file (.tsv) n/a n/a
  • File
SMBGC Annotation n/a n/a
  • File

Version History

Version 1 (earliest) Created 21st Aug 2024 at 09:17 by Marie Jossé

No revision comments

Open master cd239c1
help Creators and Submitter
Creator
  • Marie Jossé
Submitter
Activity

Views: 306   Downloads: 54   Runs: 0

Created: 21st Aug 2024 at 09:17

Annotated Properties
Topic annotations
help Attributions

None

Total size: 138 KB
Powered by
(v.1.16.0-main)
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH