Workflow Type: Galaxy
Open
Stable
Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.
Inputs
ID | Name | Description | Type |
---|---|---|---|
GEM SBML | GEM SBML | n/a |
|
Top Ranking Pathways | Top Ranking Pathways | n/a |
|
rpSBML TAR | rpSBML TAR | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | FBA | rpFBA |
4 | Thermodynamics | rpThermo |
5 | Rank Pathways | rpGlobalScore |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_4 | _anonymous_output_4 | n/a |
|
_anonymous_output_5 | _anonymous_output_5 | n/a |
|
_anonymous_output_6 | _anonymous_output_6 | n/a |
|
Version History
Version 1 (earliest) Created 29th May 2020 at 11:01 by Melchior du Lac
Added/updated 1 files
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master
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Created: 29th May 2020 at 11:01
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