Workflow Type: Galaxy
Open
Stable
Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| GEM SBML | GEM SBML | n/a |
|
| Top Ranking Pathways | Top Ranking Pathways | n/a |
|
| rpSBML TAR | rpSBML TAR | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | FBA | rpFBA |
| 4 | Thermodynamics | rpThermo |
| 5 | Rank Pathways | rpGlobalScore |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_4 | _anonymous_output_4 | n/a |
|
| _anonymous_output_5 | _anonymous_output_5 | n/a |
|
| _anonymous_output_6 | _anonymous_output_6 | n/a |
|
Version History
Version 1 (earliest) Created 29th May 2020 at 11:01 by Melchior du Lac
Added/updated 1 files
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Views: 9926 Downloads: 985 Runs: 0
Created: 29th May 2020 at 11:01
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https://orcid.org/0000-0002-9984-4689