Pathway Analysis
Version 1

Workflow Type: Galaxy
Stable

Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
Top Ranking Pathways Top Ranking Pathways n/a
  • int
rpSBML TAR rpSBML TAR n/a
  • File

Steps

ID Name Description
3 FBA rpFBA
4 Thermodynamics rpThermo
5 Rank Pathways rpGlobalScore

Outputs

ID Name Description Type
_anonymous_output_4 _anonymous_output_4 n/a
  • File
_anonymous_output_5 _anonymous_output_5 n/a
  • File
_anonymous_output_6 _anonymous_output_6 n/a
  • File

Version History

Version 1 (earliest) Created 29th May 2020 at 11:01 by Melchior du Lac

Added/updated 1 files


Open master f77122a
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Views: 6950   Downloads: 412   Runs: 0

Created: 29th May 2020 at 11:01

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Total size: 5.24 KB
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