Workflow Type:  Galaxy
        
  
        
          
            
              
    
      
        
        
    
    
      
        
        
    
    
      
        
        
    
            
          
        
        
      
  
    
      
        
      
Open
    
    
  
      
      
            Stable
        
        
Given a set of pathways generated by RetroPath2.0, this workflow informs the user as to the theoretically best performing ones based on four criteria: FBA, thermodynamic feasibility, length of the pathway, and reaction rule score.
Inputs
| ID | Name | Description | Type | 
|---|---|---|---|
| GEM SBML | GEM SBML | n/a | 
 | 
| Top Ranking Pathways | Top Ranking Pathways | n/a | 
 | 
| rpSBML TAR | rpSBML TAR | n/a | 
 | 
Steps
| ID | Name | Description | 
|---|---|---|
| 3 | FBA | rpFBA | 
| 4 | Thermodynamics | rpThermo | 
| 5 | Rank Pathways | rpGlobalScore | 
Outputs
| ID | Name | Description | Type | 
|---|---|---|---|
| _anonymous_output_4 | _anonymous_output_4 | n/a | 
 | 
| _anonymous_output_5 | _anonymous_output_5 | n/a | 
 | 
| _anonymous_output_6 | _anonymous_output_6 | n/a | 
 | 
Version History
Version 1 (earliest) Created 29th May 2020 at 11:01 by Melchior du Lac
Added/updated 1 files
Open
 master
masterf77122a
     Creators and Submitter
 Creators and SubmitterCreator
Submitter
License
Activity
Views: 9764 Downloads: 948 Runs: 0
Created: 29th May 2020 at 11:01
 Tags
 Tags Attributions
 AttributionsNone

 Visit source
Visit source Download RO-Crate
Download RO-Crate Run on Galaxy
Run on Galaxy

 https://orcid.org/0000-0002-9984-4689
 https://orcid.org/0000-0002-9984-4689
