Workflow Type:  Common Workflow Language
        
              
                
                    
                    
              
            
        
          
            
              
    
      
        
        
    
    
      
        
        
    
    
      
        
        
    
            
          
        
        
      
  
    
      
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Inputs
| ID | Name | Description | Type | 
|---|---|---|---|
| inputReads | n/a | n/a | 
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| metadata | n/a | n/a | 
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| metadataSchema | n/a | n/a | 
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| subjects | n/a | n/a | 
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| exclude | n/a | n/a | 
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| bin_widths | n/a | width of each bin in basepairs along the graph vector | 
 | 
| cells_per_file | n/a | Cells per file on component_segmentation | 
 | 
Steps
| ID | Name | Description | 
|---|---|---|
| relabel | n/a | n/a | 
| dedup | n/a | n/a | 
| overlapReads | n/a | n/a | 
| induceGraph | n/a | n/a | 
| buildGraph | n/a | n/a | 
| vizGraph | n/a | n/a | 
| odgi2rdf | n/a | n/a | 
| mergeMetadata | n/a | n/a | 
| bin_paths | n/a | n/a | 
| index_paths | Create path index | n/a | 
| segment_components | Run component segmentation | n/a | 
Outputs
| ID | Name | Description | Type | 
|---|---|---|---|
| odgiGraph | n/a | n/a | 
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| odgiPNG | n/a | n/a | 
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| seqwishGFA | n/a | n/a | 
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| odgiRDF | n/a | n/a | 
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| readsMergeDedup | n/a | n/a | 
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| mergedMetadata | n/a | n/a | 
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| indexed_paths | n/a | n/a | 
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| colinear_components | n/a | n/a | 
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Version History
Version 1 (earliest) Created 7th Oct 2020 at 10:36 by Michael R. Crusoe
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      Frozen
 Version-1
Version-1c89b183
     Creators and Submitter
 Creators and SubmitterCreators
Submitter
Discussion Channel
    
    Citation
  
  
  Soiland-Reyes, S., & Crusoe, M. R. (2022). COVID-19 PubSeq Pangenome Generate. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.63.1
    License
Activity
Views: 4037 Downloads: 1545
Created: 7th Oct 2020 at 10:36
Last updated: 21st Sep 2022 at 10:26
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 https://orcid.org/0000-0002-2961-9670
 https://orcid.org/0000-0002-2961-9670






