Workflows
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A R workflow for proteomics data analysis is reported. This pipeline was basing on protein expression projects, stored on the PRIDE database and reported on the COVID-19 Data portal. This is an R pipeline to analyze protein expression data, built on lung cell lines infected by SARS-CoV-2 variants: B.1, Delta, and Omicron BA.1 (Mezler et al. 2023) https://www.ebi.ac.uk/pride/archive/projects/PXD037265. This pipeline can obtain DEPs for each variant, starting from normalized protein expression ...
High-Performance Computing (HPC) environments are integral to quantum chemistry and computationally intense research, yet their complexity poses challenges for non-HPC experts. Navigating these environments proves challenging for researchers lacking extensive computational knowledge, hindering efficient use of domain specific research software. The prediction of mass spectra for in silico annotation is therefore inaccessible for many wet lab scientists. Our main goal is to facilitate non-experts ...
Type: Galaxy
Creators: Zargham Ahmad, Helge Hecht, Wudmir Rojas, RECETOX SpecDat
Submitters: Helge Hecht, Wudmir Rojas
This workflow provides a calculaiton of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) ...
The tool provides a calculation of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) of ...
Type: Galaxy
Creators: Andrii Neronov, Théo Boyer, Denys Savchenko, Volodymyr Savchenko
Submitter: Denys Savchenko
Protype demonstrator of a workflow reducing HESS and INTEGRAL/SPI-ACS data to common Light Curve format and combining the lightcurves into a multi-wavelength observation.
Type: Galaxy
Creators: Volodymyr Savchenko, Denys Savchenko, Andrii Neronov
Submitter: Volodymyr Savchenko
Refining Genome Annotations with Apollo
NDVI data with OpenEO to time series visualisation with HoloViz
Calculating and visualizing marine biodiversity indicators
Finding potential muon stopping sites in crystalline copper
Type: Galaxy
Creators: Leandro Liborio, Muon Spectroscopy Computational Project
Submitter: Paul De Geest
From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere