Marine Omics identifying biosynthetic gene clusters
Version 1

Workflow Type: Galaxy

Secondary metabolite biosynthetic gene cluster (SMBGC) Annotation using Neural Networks Trained on Interpro Signatures

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Inputs

ID Name Description Type
Fasta nucelotide file n/a BGC0001472.fna
  • File

Steps

ID Name Description
Prodigal Gene Predictor n/a Create the protein fasta file
Sanntis: Build Genbank n/a Use of Sanntis
Regex Find And Replace n/a Remove useless * in the protein fasta file
InterProScan n/a Create TSV file for Sanntis
Sanntis: identify biosynthetic gene clusters n/a n/a

Outputs

ID Name Description Type
Protein fasta file n/a n/a
  • File
Genbank file n/a n/a
  • File
Clean protein fasta file n/a n/a
  • File
Tabular file (.tsv) n/a n/a
  • File
SMBGC Annotation n/a n/a
  • File

Version History

Version 1 (earliest) Created 21st Aug 2024 at 09:17 by Marie Jossé

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Creator
  • Marie Jossé
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Created: 21st Aug 2024 at 09:17

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