Workflow Type:  Galaxy
        
  
        
          
            
              
    
      
        
        
    
    
      
        
        
    
    
      
        
        
    
            
          
        
        
      
  
    
      
        
      
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This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism
Inputs
| ID | Name | Description | Type | 
|---|---|---|---|
| GEM SBML | GEM SBML | n/a | 
 | 
| List of genetic parts | List of genetic parts | n/a | 
 | 
| Max (UNIPROT) enzymes per reactions | Max (UNIPROT) enzymes per reactions | n/a | 
 | 
| Top pathways to convert to SBOL | Top pathways to convert to SBOL | n/a | 
 | 
| rpSBML TAR | rpSBML TAR | n/a | 
 | 
Steps
| ID | Name | Description | 
|---|---|---|
| 5 | Extract Taxonomy | extractTaxonomy | 
| 6 | Selenzyme | rpSelenzyme | 
| 7 | SBML to SBOL | rpSBMLtoSBOL | 
| 8 | Parts Genie | PartsGenie | 
| 9 | OptDoE | rpOptBioDes | 
| 10 | DNA Weaver | DNAWeaver | 
| 11 | LCR Genie | LCRGenie | 
Outputs
| ID | Name | Description | Type | 
|---|---|---|---|
| _anonymous_output_6 | _anonymous_output_6 | n/a | 
 | 
| _anonymous_output_7 | _anonymous_output_7 | n/a | 
 | 
| _anonymous_output_8 | _anonymous_output_8 | n/a | 
 | 
| Pathway SBOLs | Pathway SBOLs | n/a | 
 | 
| _anonymous_output_9 | _anonymous_output_9 | n/a | 
 | 
| _anonymous_output_10 | _anonymous_output_10 | n/a | 
 | 
Version History
Version 1 (earliest) Created 29th May 2020 at 11:05 by Melchior du Lac
Added/updated 1 files
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Created: 29th May 2020 at 11:05
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 https://orcid.org/0000-0002-9984-4689
 https://orcid.org/0000-0002-9984-4689
