Workflow Type: Galaxy
Open
Stable
This workflow converts the top-ranking predicted pathways from the "RetroSynthesis" and "Pathway Analysis" workflows to plasmids intended to be expressed in the specified organism
Inputs
ID | Name | Description | Type |
---|---|---|---|
GEM SBML | GEM SBML | n/a |
|
List of genetic parts | List of genetic parts | n/a |
|
Max (UNIPROT) enzymes per reactions | Max (UNIPROT) enzymes per reactions | n/a |
|
Top pathways to convert to SBOL | Top pathways to convert to SBOL | n/a |
|
rpSBML TAR | rpSBML TAR | n/a |
|
Steps
ID | Name | Description |
---|---|---|
5 | Extract Taxonomy | extractTaxonomy |
6 | Selenzyme | rpSelenzyme |
7 | SBML to SBOL | rpSBMLtoSBOL |
8 | Parts Genie | PartsGenie |
9 | OptDoE | rpOptBioDes |
10 | DNA Weaver | DNAWeaver |
11 | LCR Genie | LCRGenie |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_6 | _anonymous_output_6 | n/a |
|
_anonymous_output_7 | _anonymous_output_7 | n/a |
|
_anonymous_output_8 | _anonymous_output_8 | n/a |
|
Pathway SBOLs | Pathway SBOLs | n/a |
|
_anonymous_output_9 | _anonymous_output_9 | n/a |
|
_anonymous_output_10 | _anonymous_output_10 | n/a |
|
Version History
Version 1 (earliest) Created 29th May 2020 at 11:05 by Melchior du Lac
Added/updated 1 files
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Created: 29th May 2020 at 11:05
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