Workflow Type: Galaxy
Open
Stable
Generate possible metabolic routes for the production of a target molecule in an organism of choice
Inputs
ID | Name | Description | Type |
---|---|---|---|
GEM SBML | GEM SBML | n/a |
|
Maximal Pathway Length | Maximal Pathway Length | n/a |
|
Target InChI | Target InChI | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | RetroRules | retrorules |
4 | Sink from SBML | rpExtractSink |
5 | Make Source | makeSource |
6 | RetroPath2.0 | retropath2 |
7 | RP2paths | rp2paths |
8 | Pathways to SBML | rpReader |
9 | Complete Reactions | rpCofactors |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_3 | _anonymous_output_3 | n/a |
|
_anonymous_output_5 | _anonymous_output_5 | n/a |
|
_anonymous_output_6 | _anonymous_output_6 | n/a |
|
_anonymous_output_7 | _anonymous_output_7 | n/a |
|
_anonymous_output_8 | _anonymous_output_8 | n/a |
|
_anonymous_output_9 | _anonymous_output_9 | n/a |
|
_anonymous_output_10 | _anonymous_output_10 | n/a |
|
SBML Pathways | SBML Pathways | n/a |
|
Version History
Version 1 (earliest) Created 29th May 2020 at 11:08 by Melchior du Lac
Added/updated 1 files
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master
8e7bb78
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Created: 29th May 2020 at 11:08
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