Workflows

What is a Workflow?
12 Workflows visible to you, out of a total of 12

Second part of the ecoregionalization

This workflow allows you to create an ecoregionalization map from occurrences and environmental data using a boosted regression trees model for predictions.

The workflow is intended for processing occurrence data, which should include latitude, longitude and species presence or absence. You can use example test data available with the workflow, highlighting a use case centered on the Dumont d'Urville sea region and benthic invertebrates. The primary goal of ...

Type: Galaxy

Creator: Pauline Seguineau

Submitter: Pauline Seguineau

Part 1 of ecoregionalization workflow

This workflow allows you to create an ecoregionalization map from occurrences and environmental data using a boosted regression trees model for predictions.

The workflow is intended for processing occurrence data, which should include latitude, longitude and species presence or absence. You can use example test data available with the workflow, highlighting a use case centered on the Dumont d'Urville sea region and benthic invertebrates. The primary goal of ...

Type: Galaxy

Creator: Pauline Seguineau

Submitter: Pauline Seguineau

Work-in-progress

Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

Type: Galaxy

Creators: Iacopo Cristoferi, Helena Rasche, Clinical Bioinformatics Unit, Pathology Department, Eramus Medical Center

Submitter: Helena Rasche

Work-in-progress

This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.

Type: Galaxy

Creators: Iacopo Cristoferi, Helena Rasche, Clinical Bioinformatics Unit, Pathology Department, Eramus Medical Center

Submitter: Helena Rasche

Work-in-progress

Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA

Type: Galaxy

Creators: Iacopo Cristoferi, Helena Rasche

Submitter: Helena Rasche

Stable

This workflow is created as part of a tutorial listed on GTN. The workflow shows the steps in human copy number variance detection using the Contrl_FREEC tool.

Type: Galaxy

Creators: khaled Jumah, Katarzyna Kamieniecka, Wolfgang Maier, Krzysztof Poterlowicz, poterlowicz-lab

Submitter: Khaled Jum'ah

DOI: 10.48546/workflowhub.workflow.676.1

Stable

Genome-wide alternative splicing analysis v.2

Stable

Abstract CWL Automatically generated from the Galaxy workflow file: Copy of Genome-wide alternative splicing analysis

Type: Galaxy

Creator: Cristóbal Gallardo

Submitter: Cristóbal Gallardo

Stable

This workflow correspond to the Genome-wide alternative splicing analysis training. It allows to analyze isoform switching by making use of IsoformSwitchAnalyzeR.

Stable

To discover causal mutations of inherited diseases it’s common practice to do a trio analysis. In a trio analysis DNA is sequenced of both the patient and parents. Using this method, it’s possible to identify multiple inheritance patterns. Some examples of these patterns are autosomal recessive, autosomal dominant, and de-novo variants, which are represented in the figure below. To elaborate, the most left tree shows an autosomal dominant inhertitance pattern where the offspring inherits a faulty ...

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